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KONECT > Networks > Human protein (Figeys)

Human protein (Figeys)

About this network

This is a network of interactions between proteins in Humans (Homo sapiens), from the first large-scale study of protein–protein interactions in Human cells using a mass spectrometry-based approach.

Network info

CodeMF
Category Metabolic
Data source http://research.mssm.edu/maayan/datasets/qualitative_networks.shtml
Vertex type Protein
Edge type Interaction
FormatDirected: Edges are directed Directed
Edge weightsUnweighted: Simple edges Unweighted
Size2,239 vertices (proteins)
Volume6,452 edges (interactions)
Average degree (overall)5.7633 edges / vertex
Fill0.0012876 edges / vertex2
Maximum degree314 edges
Reciprocity0.620%
Size of LCC2,217 vertices
Size of LSCC8 vertices
Wedge count353,779
Claw count21,373,531
Triangle count897
Square count166,681
4-tour count2,761,428
Power law exponent (estimated) with dmin1.7210 (dmin = 1)
Gini coefficient67.2%
Relative edge distribution entropy85.5%
Assortativity–0.33053
Clustering coefficient0.761%
Diameter10 edges
90-percentile effective diameter4.83 edges
Mean shortest path length3.98 edges
Spectral norm31.581
Algebraic connectivity0.10253
Degree distribution of the Human protein (Figeys) network
Degree distribution
Outdegree distribution of the Human protein (Figeys) network
Outdegree distribution
Indegree distribution of the Human protein (Figeys) network
Indegree distribution
Degree distribution of the Human protein (Figeys) network
Degree distribution
Outdegree distribution of the Human protein (Figeys) network
Outdegree distribution
Indegree distribution of the Human protein (Figeys) network
Indegree distribution

Out/indegree comparison

Out/indegree comparison of the Human protein (Figeys) network
Out/indegree comparison
Degree distribution of the Human protein (Figeys) network
Degree distribution
Outdegree distribution of the Human protein (Figeys) network
Outdegree distribution
Indegree distribution of the Human protein (Figeys) network
Indegree distribution
Degree distribution of the Human protein (Figeys) network
Degree distribution
Outdegree distribution of the Human protein (Figeys) network
Outdegree distribution
Indegree distribution of the Human protein (Figeys) network
Indegree distribution
Clustering coefficient distribution of the Human protein (Figeys) network
Clustering coefficient distribution
Distance distribution of the Human protein (Figeys) network
Distance distribution
Distance distribution on a logistic scale of the Human protein (Figeys) network
Distance distribution on a logistic scale
Top-k eigenvalues of A of the Human protein (Figeys) network
Top-k eigenvalues of A
Top-k eigenvalues of N of the Human protein (Figeys) network
Top-k eigenvalues of N
Top-k eigenvalues of L of the Human protein (Figeys) network
Top-k eigenvalues of L
Spectral distribution of the eigenvalues of A of the Human protein (Figeys) network
Spectral distribution of the eigenvalues of A
Spectral distribution of the eigenvalues of N of the Human protein (Figeys) network
Spectral distribution of the eigenvalues of N
Spectral distribution of the eigenvalues of L of the Human protein (Figeys) network
Spectral distribution of the eigenvalues of L
Cumulative spectral distribution of A of the Human protein (Figeys) network
Cumulative spectral distribution of A
Cumulative spectral distribution of N of the Human protein (Figeys) network
Cumulative spectral distribution of N
Cumulative spectral distribution of L of the Human protein (Figeys) network
Cumulative spectral distribution of L
Complex eigenvalues of the asymmetric adjacency matrix of the Human protein (Figeys) network
Complex eigenvalues of the asymmetric adjacency matrix

Layout

Layout of the Human protein (Figeys) network
Layout

Downloads

TSV file:downloadmaayan-figeys.tar.bz2 (18.57 KiB)

References

[1] Human protein (figeys) network dataset -- KONECT, April 2017. [ http ]
[2] Rob M. Ewing, Peter Chu, Fred Elisma, Hongyan Li, Paul Taylor, Shane Climie, Linda McBroom-Cerajewski, Mark D. Robinson, Liam O'Connor, Michael Li, Rod Taylor, Moyez Dharsee, Yuen Ho, Adrian Heilbut, Lynda Moore, Shudong Zhang, Olga Ornatsky, Yury V. Bukhman, Martin Ethier, Yinglun Sheng, Julian Vasilescu, Mohamed Abu-Farha, Jean-Philippe P. Lambert, Henry S. Duewel, Ian I. Stewart, Bonnie Kuehl, Kelly Hogue, Karen Colwill, Katharine Gladwish, Brenda Muskat, Robert Kinach, Sally-Lin L. Adams, Michael F. Moran, Gregg B. Morin, Thodoros Topaloglou, and Daniel Figeys. Large-scale mapping of human protein--protein interactions by mass spectrometry. Molecular Systems Biology, 3, 2007.

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