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Human protein (Vidal)

About this network

This network represens an initial version of a proteome-scale map of Human binary protein–protein interactions

Network info

CodeMV
Category Metabolic
Data source http://research.mssm.edu/maayan/datasets/qualitative_networks.shtml
Vertex type Protein
Edge type Interaction
FormatUndirected: Edges are undirected Undirected
Edge weightsUnweighted: Simple edges Unweighted
Metadata Loops:  An edge may connect a node with itself Loop
Size3,133 vertices (proteins)
Volume6,726 edges (interactions)
Average degree4.2936 edges / vertex
Fill0.0013700 edges / vertex2
Maximum degree129 edges
Size of LCC2,783 vertices
Wedge count88,809
Claw count1,399,841
Triangle count1,047
Square count10,216
4-tour count449,262
Power law exponent (estimated) with dmin3.0310 (dmin = 14)
Gini coefficient54.1%
Relative edge distribution entropy92.6%
Assortativity–0.12566
Clustering coefficient3.54%
Diameter13 edges
90-percentile effective diameter5.87 edges
Mean shortest path length4.80 edges
Spectral norm16.614
Algebraic connectivity0.069808
Degree distribution of the Human protein (Vidal) network
Degree distribution
Degree distribution of the Human protein (Vidal) network
Degree distribution
Degree distribution of the Human protein (Vidal) network
Degree distribution
Clustering coefficient distribution of the Human protein (Vidal) network
Clustering coefficient distribution
Distance distribution of the Human protein (Vidal) network
Distance distribution
Distance distribution on a logistic scale of the Human protein (Vidal) network
Distance distribution on a logistic scale
Top-k eigenvalues of A of the Human protein (Vidal) network
Top-k eigenvalues of A
Top-k eigenvalues of N of the Human protein (Vidal) network
Top-k eigenvalues of N
Top-k eigenvalues of L of the Human protein (Vidal) network
Top-k eigenvalues of L
Spectral distribution of the eigenvalues of A of the Human protein (Vidal) network
Spectral distribution of the eigenvalues of A
Spectral distribution of the eigenvalues of N of the Human protein (Vidal) network
Spectral distribution of the eigenvalues of N
Spectral distribution of the eigenvalues of L of the Human protein (Vidal) network
Spectral distribution of the eigenvalues of L
Cumulative spectral distribution of A of the Human protein (Vidal) network
Cumulative spectral distribution of A
Cumulative spectral distribution of N of the Human protein (Vidal) network
Cumulative spectral distribution of N
Cumulative spectral distribution of L of the Human protein (Vidal) network
Cumulative spectral distribution of L

Layout

Layout of the Human protein (Vidal) network
Layout

Downloads

TSV file:downloadmaayan-vidal.tar.bz2 (22.85 KiB)

References

[1] Human protein (vidal) network dataset -- KONECT, October 2016. [ http ]
[2] Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, and Nono Ayivi-Guedehoussou. Towards a proteome-scale map of the human protein--protein interaction network. Nature, (7062):1173--1178, 2005.

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