Reactome
About this network
This is a network of protein–protein interactions in the species Homo sapiens, i.e., in Humans. The data is curated by the Reactome project, an open online database of biological pathways.
Network info
Code | RC |
Category | ⬤ Metabolic |
Date of origin | 2014 |
Data source | http://www.reactome.org/pages/download-data/ |
Vertex type | Protein |
Edge type | Interaction |
Format | Undirected |
Edge weights | Unweighted |
Metadata | Loop |
Size | 6,327 vertices (proteins) |
Volume | 147,547 edges (interactions) |
Average degree | 46.640 edges / vertex |
Fill | 0.0073705 edges / vertex^{2} |
Maximum degree | 855 edges |
Size of LCC | 5,973 vertices |
Wedge count | 20,746,788 |
Claw count | 1,500,721,941 |
Triangle count | 4,187,734 |
Square count | 521,539,475 |
4-tour count | 4,255,595,272 |
Power law exponent (estimated) with d_{min} | 1.7410 (d_{min} = 17) |
Gini coefficient | 65.7% |
Relative edge distribution entropy | 91.2% |
Assortativity | 0.24487 |
Clustering coefficient | 60.6% |
Diameter | 24 edges |
90-percentile effective diameter | 5.39 edges |
Mean shortest path length | 4.14 edges |
Spectral norm | 208.17 |
Algebraic connectivity | 0.013403 |
Downloads
TSV file: | reactome.tar.bz2 (373.09 KiB) |
References
[1] | Reactome network dataset -- KONECT, October 2016. [ http ] |
[2] | G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, GR Gopinath, GR Wu, Lisa Matthews, et al. Reactome: A knowledgebase of biological pathways. Nucleic Acids Research, 33(suppl 1):D428--D432, 2005. |